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New online workshop on modeling software

The Center for Reproducible Biomedical Modeling is excited to announce a new monthly online workshop on modeling software! The goals of the seminar are to foster discussion about challenges associated with stages of the modeling workflow and to provide practical tutorials that address some of these challenges. The workshops will be held at 12 pm [...]

2020-05-06T20:26:51-07:00August 5th, 2019|Front Page News, News|

Applications for the EBMO Whole-Cell Modeling School due January 13, 2019

We are now accepting applications for the EBMO Whole-Cell Modeling School which will take place April 7-13, 2019 at the Center for Genomic Regulation in Barcelona, Spain. Whole-cell models that predict phenotype from genotype by representing all of the biochemical activity inside cells are needed to advance biology, bioengineering, and medicine. Achieving whole-cell models will require [...]

2018-12-14T07:18:23-08:00December 14th, 2018|News|

Center funded by NIBIB and NIGMS

We are excited to announce that the NIBIB and NIGMS have committed to fund the center through 2023 to develop technologies for scalable and reproducible modeling, provide free services to the community, advocate for reproducible modeling, and train researchers how to conduct modeling scalably and reproducibly. More info: EurekAlert Icahn School of Medicine [...]

2020-05-06T20:58:09-07:00July 1st, 2018|Front Page News, News|

Karr Lab launched new version of WholeCell.org to foster whole-cell modeling

The new website features an overview of the goals, challenges, plans, and methods of whole-cell modeling, as well as links to whole-cell models and whole-cell modeling tools, training materials, events, and research groups.

2020-05-06T20:52:10-07:00July 1st, 2018|Front Page News, News|

Early version of kinetic_datanator data aggregation software released

Prof. Karr has his team have released an early version of their kinetic_datanator software tool for finding experimental data for building and calibrating dynamical models of cellular biochemistry. kinetic_datanator helps users find data such as  metabolite, RNA, and protein abundances; protein complex compositions; transcription factor binding motifs; and kinetic parameters. kinetic_datanator is particularly useful for building large models, [...]

2019-06-17T05:45:05-07:00August 24th, 2017|News|