We released a new version (4.0) of the SemGen platform that includes a new user interface and new model merging capabilities.
Prof. Sauro released an updated version (1.3.7) of the Tellurium modeling and reproducibility platform.
Prof. Sauro released an updated version (1.4.18) of the libRoadRunner high-performance simulation engine.
Prof. Sauro has released an updated version of his textbook "Systems Biology: Introduction to Pathway Modeling"
Prof. Sauro has released an updated version of his textbook "Enzyme Kinetics for Systems Biology"
Profs. Karr and Goldberg are writing a comprehensive primer on whole-cell modeling, both to train their lab and teach the community. It covers the fundamentals of cell modeling, including data aggregation and organization; model design, calibration, representation, annotation, and composition; model testing; logging, organizing, and analyzing simulation results; and software engineering. It emphasizes practical skills, [...]
Dear colleague, We would like to invite you to participate in a survey of the goals, methods, and challenges of biomodeling. The goal of the survey is to solicit your input into the biomodeling community's efforts to advance biomodeling. We plan to share the results of the survey through a review article in early 2018. [...]
James Sluka The Biocomplexity Institute Indiana University Bloomington, IN, USA
Markus Covert Stanford University Stanford, CA, USA
Marc Birtwistle and Jianlong Wang Icahn school of Medicine at Mount Sinai New York, NY, USA