Tellurium version 1.3.7 released
Prof. Sauro released an updated version (1.3.7) of the Tellurium modeling and reproducibility platform.
libRoadRunner version 1.4.18 released
Prof. Sauro released an updated version (1.4.18) of the libRoadRunner high-performance simulation engine.
“Systems Biology: Introduction to Pathway Modeling” updated
Prof. Sauro has released an updated version of his textbook "Systems Biology: Introduction to Pathway Modeling"
“Enzyme Kinetics for Systems Biology” updated
Prof. Sauro has released an updated version of his textbook "Enzyme Kinetics for Systems Biology"
“An introduction to whole-cell modeling” available online
Profs. Karr and Goldberg are writing a comprehensive primer on whole-cell modeling, both to train their lab and teach the community. It covers the fundamentals of cell modeling, including data aggregation and organization; model design, calibration, representation, annotation, and composition; model testing; logging, organizing, and analyzing simulation results; and software engineering. It emphasizes practical skills, [...]
Multiscale mechanistic simulation of acetominophen-induced liver toxicity
James Sluka The Biocomplexity Institute Indiana University Bloomington, IN, USA
Multiscale, systems modeling of macrophage infection
Markus Covert Stanford University Stanford, CA, USA
Toward whole-cell models for precision medicine
Marc Birtwistle and Jianlong Wang Icahn school of Medicine at Mount Sinai New York, NY, USA
Alzheimer modeling
Jean-Marie Bouteiller Assistant Professor Department of Biomedical Engineering University of Southern California Los Angeles, CA, USA
BioModels model repository
Henning Hermjakob The European Bioinformatics Institute Cambridge, UK