TR&D 2 – Standards

Formalized OMEX metadata specification

As a common language to represent annotations for models, we have developed, in close collaboration with the COMBINE community, the OMEX metadata specification. This standard provides not only the specification of sharable, RDF formatted annotations, but also detailed examples and a set of recommended biological ontologies to use in those annotations. This standard is [...]

Hunter Robbins2022-08-02T17:45:49-07:00July 26th, 2022|Online simulation and visualization, TR&D 2 - Standards|

Enhanced SED-ML libraries and specification

The Simulation Experiment Description Markup Language (SED-ML) is a standardized, community-based format that explicitly describes simulation processes for biochemical models, ensuring that researchers who are interested in a published model can efficiently reproduce and build upon that model. Its use is independent of specific operating systems or versions of software. The CRBM and COMBINE [...]

Hunter Robbins2022-07-26T22:50:46-07:00July 26th, 2022|Online simulation and visualization, TR&D 2 - Standards|