Jonathan Karr

/Jonathan Karr

About Jonathan Karr

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So far Jonathan Karr has created 57 blog entries.

libRoadRunner version 1.4.18 released

Prof. Sauro released an updated version (1.4.18) of the libRoadRunner high-performance simulation engine.

August 24th, 2017|News|

“Systems Biology: Introduction to Pathway Modeling” updated

Prof. Sauro has released an updated version of his textbook "Systems Biology: Introduction to Pathway Modeling"

August 24th, 2017|News|

“Enzyme Kinetics for Systems Biology” updated

Prof. Sauro has released an updated version of his textbook "Enzyme Kinetics for Systems Biology"

August 24th, 2017|News|

“An introduction to whole-cell modeling” available online

Profs. Karr and Goldberg are writing a comprehensive primer on whole-cell modeling, both to train their lab and teach the community. It covers the fundamentals of cell modeling, including data aggregation and organization; model design, calibration, representation, annotation, and composition; model testing; logging, organizing, and analyzing simulation results; and software engineering. It emphasizes practical skills, [...]

August 24th, 2017|News|

Survey of the goals and needs of biomodeling

Dear colleague, We would like to invite you to participate in a survey of the goals, methods, and challenges of biomodeling. The goal of the survey is to solicit your input into the biomodeling community's efforts to advance biomodeling. We plan to share the results of the survey through a review article in early 2018. [...]

August 24th, 2017|News|

Multiscale mechanistic simulation of acetominophen-induced liver toxicity

James Sluka The Biocomplexity Institute Indiana University Bloomington, IN, USA

September 12th, 2016|Collaborative project, TR&D 2 - CPs|

Multiscale, systems modeling of macrophage infection

Markus Covert Stanford University Stanford, CA, USA

September 13th, 2016|Collaborative project, TR&D 1 - CPs|

Toward whole-cell models for precision medicine

Marc Birtwistle and Jianlong Wang Icahn school of Medicine at Mount Sinai New York, NY, USA

September 13th, 2016|Collaborative project, TR&D 1 - CPs|

Alzheimer modeling

Jean-Marie Bouteiller Assistant Professor Department of Biomedical Engineering University of Southern California Los Angeles, CA, USA

September 12th, 2016|Service project, Technical consulting, TR&D 1 - SPs|

BioModels model repository

Henning Hermjakob The European Bioinformatics Institute Cambridge, UK

June 4th, 2017|Collaborative project, TR&D 2 - CPs|